Skip to main content

Call for papers - Omics technologies and applications in horticultural crops

Guest Editors

Yunpeng Cao, PhD, Chinese Academy of Sciences, China
Mohammad Shah Jahan, PhD, Sher-e-Bangla Agricultural University, Bangladesh
Muhammad Irfan Siddique, PhD, North Carolina State University, USA

Submission Status: Open   |   Submission Deadline: 13 December 2024

BMC Plant Biology invites submissions to the Collection Omics technologies and applications in horticultural crops. This Collection focuses on the development and applications of omics technologies in horticultural crops, seeking to highlight the relevance and innovations of (meta-)genomics, (meta-)transcriptomics, proteomics, metabolomics, phenomics and ionomics in horticultural crop biology, as well as how they can be leveraged to improve horticultural crops

New Content ItemThis Collection supports and amplifies research related to SDG 2: Zero Hunger

Meet the Guest Editors

Back to top

Yunpeng Cao, PhD, Chinese Academy of Sciences, China

Dr Cao is an associate Professor at the Wuhan Botanical Garden, Chinese Academy of Sciences. His research interests are in the fields of horticulture crop genetics, molecular biology, and genomics, including but not limited to the following three aspects: gene mining and function identification, genetic mechanism of fruit quality traits, and molecular breeding. Dr Cao serves as an editorial board member for several eminent journals including BMC Plant Biology and BMC Genomics.

Mohammad Shah Jahan, PhD, Sher-e-Bangla Agricultural University, Bangladesh

Dr Shah Jahan currently holds the position of Associate Professor at Sher-e-Bangla Agricultural University (SAU). His research focuses on understanding the physiological and molecular mechanisms of horticultural crops in adapting to abiotic stress conditions. He employs hormones and biostimulants for this purpose. Dr Jahan's work primarily revolves around identifying new genes responsible for stress tolerance mechanisms in plants, using integrated omics techniques. He also investigates the role of phytohormones in sugar metabolism. Recently, he has been studying secondary metabolites responsible for different pigmentation in plants such as yam and aroids.

Muhammad Irfan Siddique, PhD, North Carolina State University, USA

Dr Siddique is working as a Research Scholar at the Department of Horticultural Sciences, at North Carolina State University (USA). His research focuses on understanding the genetics of complex traits in horticultural crops especially resistance to biotic, and abiotic stresses, nutrition, and quality improvement through integrated approaches of classical and molecular breeding, plant pathology, and computational biology. He is mainly interested in breeding horticultural crops for disease resistance, high yield and nutritional values, and quality seed production.

About the Collection

The advent of high-throughput omics techniques has revolutionized our understanding of the intricate molecular mechanisms underlying plant growth, development, and stress responses. Continuing to advance our understanding of omics technologies in horticulture research is crucial. Omics technologies indeed allow us to reveal the genetic and molecular mechanisms underlying key traits and regulatory responses in horticultural crops, thereby facilitating targeted breeding efforts towards horticultural varieties and germplasms with enhanced agronomic traits, nutritional quality and stress resilience. Moreover, interdisciplinary research that integrates omics approaches with fields such as computational biology, bioinformatics, and systems biology, can provide a ‘holistic picture’ on key genes and regulatory pathways e.g. involved in fruit ripening, and disease and abiotic stress tolerance. These studies are essential to develop novel breeding strategies and sustainable agriculture practices.

Omics approaches hold great potential to substantially advance horticultural crop research, including personalized crop breeding tailored to specific environmental conditions, the discovery of novel bioactive compounds, and the optimization of crop management practices for sustainable production systems. In support of the United Nations’s Sustainable Development Goal SDG 2 (Zero Hunger), BMC Plant Biology invites submissions to the Collection Omics technologies and applications in horticultural crop research. This Collection focuses on the development and applications of omics technologies in horticultural crops, seeking to highlight the relevance and innovations of (meta-)genomics, (meta-)transcriptomics, proteomics, metabolomics, phenomics and ionomics in horticultural crop biology, as well as how they can be leveraged to improve horticultural crops.

We invite researchers and experts in the field to submit research articles that explore, but are not limited to, the following topics:

  • Application and integration of omics technologies (e.g. genomics, meta-genomics, transcriptomics, metabolomics, proteomics) for horticultural crop improvement
  • Omics technologies and breeding of horticultural crops
  • Enhancing horticultural crops through multi-omics data
  • Understanding gene functions and networks in horticultural crops by using omics tools
  • Omics technologies and approaches in precision agriculture
  • Omics technologies and applications in sustainable agriculture and plant disease control
  • Population genomics of horticultural plant pathogens
  • Multi-omics approaches applied to plant-pathogen interactions
  • Genomics-assisted breeding of horticultural crop varieties for yield improvement and disease tolerance
  • Plant phenomics and ionomics applied to horticultural crop varieties (e.g. trait characterization and improvement)
  • Integrative and emerging omics methods/approaches applied to horticultural crop research
  • Enhancing fruit traits through multi-omics approaches
  • Quantitative trait loci (QTL) mapping and genome-wide association studies (GWAS) for horticultural crop breeding
  • Small RNA-omics to study regulatory networks associated with horticultural crop traits
     

Image credit: druvo / Getty Images / iStock

  1. Cardamine violifolia is a significant Brassicaceae plant known for its high selenium (Se) accumulation capacity, serving as an essential source of Se for both humans and animals. WRKY transcription factors play c...

    Authors: Xiao-Meng Liu, Zhi-Gang Yuan, Shen Rao, Wei-Wei Zhang, Jia-Bao Ye, Shui-Yuan Cheng and Feng Xu
    Citation: BMC Plant Biology 2024 24:860
  2. Flowers can be a source of essential oils used in the manufacture of substances with high economic value. The ethylene response factor (ERF) gene family plays a key role in regulating secondary metabolite bios...

    Authors: Xiancai Yin, Hongchen Yang, Keying Ding, Yuanzhi Luo, Wanqing Deng, Jianwei Liao, Yuanzhi Pan, Beibei Jiang, Xue Yong and Yin Jia
    Citation: BMC Plant Biology 2024 24:851
  3. Walnut is an oilseed tree species and an ecologically important woody tree species that is rich in oil and nutrients. In light of differences in the lipid content, fatty acid composition and key genes expressi...

    Authors: Yuanru Hao, Xiangrui Ge, Rui Xu, Xiaona Zhao and Meizhi Zhai
    Citation: BMC Plant Biology 2024 24:828
  4. Salt Overly Sensitive 1 (SOS1), a plasma membrane Na+/H+ exchanger, is essential for plant salt tolerance. Salt damage is a significant abiotic stress that impacts plant species globally. All living organisms req...

    Authors: Chenjing Shang, Li Sihui, Chunyuan Li, Quaid Hussain, Pengyu Chen, Muhammad Azhar Hussain and Jackson Nkoh Nkoh
    Citation: BMC Plant Biology 2024 24:805
  5. Dendrobium officinale Kimura et Migo (D. officinale) is parasitic on rocks or plants with very few mineral elements that can be absorbed directly, so its growth and development are affected by nutritional defici...

    Authors: ZhiYuan Feng, YaWen Li, SiXue Zhang, Jingjing Song, HaoXin Xiang, JunRu Huang, HongHong Fan and Lin Liu
    Citation: BMC Plant Biology 2024 24:803
  6. Postharvest quality deterioration poses a significant challenge to the commercial value of fresh lotus seeds. Low temperature storage is widely employed as the primary method for preserving postharvest lotus s...

    Authors: Lin Chen, Gangqiang Dong, Heyun Song, Jia Xin, Yanyan Su, Wei Cheng, Mei Yang and Heng Sun
    Citation: BMC Plant Biology 2024 24:755
  7. Alkaloids, important secondary metabolites produced by plants, play a crucial role in responding to environmental stress. Heuchera micrantha, a well-known plant used in landscaping, has the ability to purify air,...

    Authors: Weichang Gong, Lina Xiong and Hongbo Fu
    Citation: BMC Plant Biology 2024 24:639
  8. Long-term continuous cropping has resulted in the frequent occurrence of fusarium wilt of watermelon (Citrullus lanatus). AMF inoculation can alleviate the continuous cropping barrier and reduce the incidence of ...

    Authors: Wei Li, Chengshang Zhu, Yulu Song, Yufan Yuan, Min Li and Yingkun Sun
    Citation: BMC Plant Biology 2024 24:593
  9. Bracts are important for ornamental plants, and their developmental regulation process is complex; however, relatively little research has been conducted on bracts. In this study, physiological, biochemical an...

    Authors: Xiangdong Liu, Yaonan Peng, Qinghui Zeng, Yuwan Ma, Jin Liu, Yaqi Huang, Xiaoying Yu, Jun Luo, Yanlin Li, Meng Li and Fuxiang Cao
    Citation: BMC Plant Biology 2024 24:543

Submission Guidelines

Back to top

This Collection welcomes submission of original Research Articles. Should you wish to submit a different article type, please read our submission guidelines to confirm that type is accepted by the journal. Articles for this Collection should be submitted via our submission system, Snapp. During the submission process you will be asked whether you are submitting to a Collection, please select "Omics technologies and applications in horticultural crops" from the dropdown menu.

Articles will undergo the journal’s standard peer-review process and are subject to all of the journal’s standard policies. Articles will be added to the Collection as they are published.

The Editors have no competing interests with the submissions which they handle through the peer review process. The peer review of any submissions for which the Editors have competing interests is handled by another Editorial Board Member who has no competing interests.